The Position of ADME Predictions in Multi-Objective QSAR

The Position of ADME Predictions in Multi-Objective QSAR

Anna Tsantili-Kakoulidou
DOI: 10.4018/IJQSPR.2021010101
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Abstract

ADME properties and toxicity predictions play an essential role in prioritization and optimization of drug molecules. According to recent statistics, drug efficacy and safety are principal reasons for drug failure. In this perspective, the position of ADME predictions in the evolution of traditional QSAR from the single objective of biological activity to a multi-task concept is discussed. The essential features of ADME and toxicity QSAR models are highlighted. Since such models are applied to prioritize existing or virtual project compounds with already established or predicted target affinity, a mechanistic interpretation, although desirable, is not a primary goal. However, a broad applicability domain is crucial. A future challenge with multi-objective QSAR is to adapt to the realm of big data by integrating techniques for the exploitation of the continuously increasing number of ADME data and the huge amount of clinical development endpoints for the sake of efficacy and safety of new drug candidates.
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Translating The Acronym Adme

Despite its extensive use, the ADME acronym refers to a rather broad set of not well defined physiological properties, forming a network, which if translated to particular measurements, results in interlinked outcomes. The most common assays which shape the ADME profiling may be interpreted in this context (Wishart, 2007). Thus, in vitro permeability assays, such as Caco2, MDCK, PAMPA, are related to the ‘A’ and ‘D’ of the acronym, while % human intestinal absorption (% HIA), next to ‘A’ and ‘D’, involves also ‘M’, if metabolism in the gut wall is considered. Blood-brain barrier penetration is related to ‘A’, ‘D’ and ‘M’. Volume of distribution and plasma protein binding are related to ‘D’, while the latter is also related to ‘E’ considering that high PPB results in greater half-life. Oral bioavailability is related to ‘A’ and ‘E’ and elimination or plasma half-life to ‘M’ and ‘E’. Cytochrome P450 (CYP) metabolic stability as a measure of the resistance or tendency of a drug to first-pass effect is related to ‘M’ and ‘E’ (Wishart, 2007).

Having answered to a great extent the problem of oral bioavailability and permeability, as deduced by the latest statistics, the network of all other assays can be considered to be related to efficacy, reinforcing the sustained role of ADME properties in the multi-objective environment of drug discovery process. More to the point, safety, often incorporated as T in ADME(T) is shaped by several endpoints including metabolite-mediated toxicity, inhibition of certain CYP isoforms, being directly related with ‘M’, off target activities and promiscuity as well as tissue and organ accumulation (drug induced hepato-toxicity and cardiotoxicity) and effect on membrane phospholipids (drug induced phospholipidosis).

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